Soil & Water Res., 2015, 10(4):271-277 | DOI: 10.17221/185/2014-SWR

Already a short-term soils exposure to the field-rate glufosinate concentration significantly influences soil bacterial communitiesOriginal Paper

Anna KOPČÁKOVÁ1, Jaroslav LEGÁTH2, Peter PRISTAŠ1, Peter JAVORSKÝ1
1 Institute of Animal Physiology, Slovak Academy of Sciences, Košice, Slovak Republic
2 University of Veterinary Medicine and Pharmacy, Košice, Slovak Republic

The early impact of glufosinate derived herbicide Basta® 15 on bacterial communities of two different soils never exposed to this herbicide was investigated using cultivation approach and non-cultivation based denaturing gradient gel electrophoresis (DGGE) analysis of amplified 16S rRNA genes. Under the simulated laboratory conditions glufosinate treatment increased numbers of total cultivable heterotrophic bacteria in both tested soils. Surprisingly even the lowest glufosinate concentration (1 mmol) significantly affected bacterial community composition in both tested soils and original populations were replaced by new ones upon the 2 days glufosinate treatment. In nutrient rich Haniska soil the effect was dose dependent and glufosinate treatment decreased genetic diversity of bacterial population. In nutrient poor Kaľava soil the highest glufosinate concentration (16 mmol) increased the diversity of bacterial population probably as a result of carbon source supplementation. Glufosinate treatment selected Gram-negative bacteria in both soils. Two species of Enterobacter genus were found to be dominant in glufosinate treated Haniska soil and Pseudomonas beteli and Brevundimonas diminuta were found to be dominant in glufosinate treated Kaľava soil using non-cultivation based DGGE method. Our data indicated that under the simulated soil conditions the soil bacterial community was significantly affected even by a short-term exposure to glufosinate.

Keywords: bacteria; PCR-DGGE; phosphinotricin; soil biodiversity

Published: December 31, 2015  Show citation

ACS AIP APA ASA Harvard Chicago Chicago Notes IEEE ISO690 MLA NLM Turabian Vancouver
KOPČÁKOVÁ A, LEGÁTH J, PRISTAŠ P, JAVORSKÝ P. Already a short-term soils exposure to the field-rate glufosinate concentration significantly influences soil bacterial communities. Soil & Water Res. 2015;10(4):271-277. doi: 10.17221/185/2014-SWR.
Download citation

References

  1. Ahmad I., Malloch D. (1995): Interaction of soil microflora with the bioherbicide phosphinothricin. Agriculture, Ecosystems & Environment, 54: 165-174. Go to original source...
  2. Bartsch K., Tebbe C.C. (1989): Initial steps in degradation of phosphinothricin (glufosinate) by soil bacteria. Applied and Environmental Microbiology, 55: 711-716. Go to original source... Go to PubMed...
  3. Chen W.C, Yen J.H., Chang C.S., Wang Y.S. (2008): Effects of herbicide butachlor on soil microorganisms and on nitrogen-fixing abilities in paddy soil. Ecotoxicology and Environmental Safety, 72: 120-27. Go to original source... Go to PubMed...
  4. Colanduoni J.A., Villafranca J.J. (1986): Inhibition of E. coli glutamine synthetase by phosphinothricin. Bioorganic Chemistry, 14: 163-169. Go to original source...
  5. el Fantroussi S., Verschuere L., Verstraete W., Top E.M. (1999): Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. Applied and Environmental Microbiology, 65: 982-988. Go to original source... Go to PubMed...
  6. Ernst D., Rosenbrock-Krestel H., Kirchhof G., Bieber E., Giunaschwili N., Müller R., Fischbeck G., Wagner T., Sandermann H., Hartmann A. (2008): Molecular investigations of the soil, rhizosphere and transgenic glufosinate-resistant rape and maize plants in combination with herbicide (Basta®) application under field conditions. Zeitschrift für Naturforschung, 63c: 864D872. Go to original source... Go to PubMed...
  7. Gallina M.A., Stephenson G.R. (1992): Dissipation of [14C] glufosinate in two Ontario soils. Journal of Agricultural and Food Chemistry, 40: 165-168. Go to original source...
  8. Griffiths B.S., Cau S., Thompson J., Hackett C.A., Cortet J., Pernin C., Krogh P.H. (2008): Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil, 308: 93-103. Go to original source...
  9. Hsiao Ch.-L., Young Ch.-Ch., Wang Ch.-Y. (2007): Screening and identification of glufosinate-degrading bacteria from glufosinate-treated soils. Weed Science, 55: 631-637. Go to original source...
  10. Jensen S., Øvreas L., Daae F.L., Torsvik V. (1998): Diversity in methane enrichments from an agricultural soil revealed by DGGE separation of PCR amplified 16S rDNA fragments. FEMS Microbiology Ecology, 26: 17-26. Go to original source...
  11. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., Yi H., Won S., Chun J. (2012): Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. International Journal of Systematic and Evolutionary Microbiology, 62: 716-721. Go to original source... Go to PubMed...
  12. Kriete G., Broer I. (1996): Influence of the herbicide phosphinothricin on growth and nodulation capacity of Rhizobium meliloti. Applied Microbiology and Biotechnology, 46: 580-586. Go to original source...
  13. Lerner A., Shor Y., Vinokurov A., Okon Y., Jurkevitch E. (2006): Can denaturing gradient gel elektrophoresis (DGGE) analysis of amplified 16S rDNA of soil bacterial populations be used in forensic invenstigations? Soil Biology and Biochemistry, 38: 1188-1192. Go to original source...
  14. Lopez-Silas F.J., Cardenas J., Franco A.R. (1999): Biochemical and genetic analysis of a Chlamydonomas reihardtii mutant devoid of chloroplastic glutamine synthetase activity. Planta, 207: 436-441. Go to original source...
  15. Luo H.F., Qi H.Y., Zhang H.X. (2004): Diversity surveys of soil bacterial community by cultivation-based methods and molecular fingerprinting techniques. Journal of Environmental Science (China), 16: 581-584.
  16. Morel M., Buee M., Chalot M., Brun A. (2006): NADP dependent glutamate dehydrogenase: a dispensable function in ectomycorrhizal fungi. New Phytologist, 169: 179-189. Go to original source... Go to PubMed...
  17. Mueller J.G., Skipper H.D., Lawrence E.G., Kline E.L. (1989): Bacterial stimulation by carbamothioate herbicides. Weed Science, 37: 424-427. Go to original source...
  18. Murray A.E., Hollibaugh J.T., Orrego C. (1996): Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Applied and Environmental Microbiology, 62: 2676-2680. Go to original source... Go to PubMed...
  19. Nakatsu C.H., Torsvik V., Øvreås L. (2000): Soil Community using DGGE of 16S r DNA polymerase chain reaction products. Soil Science Society of America Journal, 64: 1382-1388. Go to original source...
  20. Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. (1996): Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. Journal of Bacteriology, 178: 5636-5643. Go to original source... Go to PubMed...
  21. Nur Masirah M.Z., Mohamad R.B., Kamaruzaman S., Morshed M.M., Awang Y.H. (2013): Growth-inhibitory effects of herbicides on soil bacterial population in oil palm plantation. Journal of Pure and Applied Microbiology, 7: 1799-1808. Go to original source...
  22. Rappe M.S., Giovannoni S.J. (2003): The uncultured microbial majority. Annual Review of Microbiology, 57: 369-394. Go to original source... Go to PubMed...
  23. Seghers D., Verthe K., Reheul D., Bulcke R., Siciliano S.D.,Verstraete W., Top E.M. (2003): Effect of long-term herbicide applications on the bacterial community structure and function in an agricultural soil. FEMS Microbiology Ecology, 46: 139-146. Go to original source... Go to PubMed...
  24. Smith A.E., Belyk M. (1989): Field persistance studies with the herbicide glufosinate -ammonium in Saskatchewan soils. Journal of Environmental Quality, 18: 475-479. Go to original source...
  25. Tebbe C.C., Reber H.H. (1988): Utilization of the herbicide phosphinotricin as a nitrogen source by soil bacteria. Applied Microbiology and Biotechnology, 29: 103-105. Go to original source...
  26. Torsvik V., Goksoyr J., Daae F.L. (1990): High diversity in DNA of soil bacteria. Applied and Environmental Microbiology, 56: 782-787. Go to original source... Go to PubMed...
  27. Tothova T., Sobekova A., Holovska K., Legath J., Pristas P., Javorsky P. (2010): Natural glufosinate resistance of soil microorganisms and GMO safety. Central Europen Journal of Biology, 5: 656-663. Go to original source...
  28. Vallaeys T., Topp E., Muyzer G., Macheret V., Laguerre G., Rigaud A., Soulas G. (1997): Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs. FEMS Microbiology Ecology, 24: 279-285. Go to original source...
  29. Varadyova Z., Mihalikova K., Kisidayova S., Javorsky P. (2006): Fermentation pattern of the rumen and hindgut inocula of sheep grazing on the area polluted from non-ferrous metal industry. Czech Journal of Animal Science, 51: 66-72. Go to original source...
  30. Quinn J.P., Heron J.K., McMullan G. (1993): Glufosinate tolerance and utilization by soil and aquatic bacteria. Biology and Environment Proceedings of the Royal Irish Academy, 93: 181-186.
  31. Ward D.M., Weller R., Bateson M.M. (1990): 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature, 345: 63-65. Go to original source... Go to PubMed...
  32. Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. (1991): 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology, 173: 697-703. Go to original source... Go to PubMed...

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.